PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8657
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 253aa    MW: 27331.1 Da    PI: 4.5231
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8657genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018122143223
                               EETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                               +Cp C+k F ++     H+++H
  Tp57577_TGAC_v2_mRNA8657 122 TCPVCKKEFATWRAAFGHMNKH 143
                               6*******************99 PP

Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MNQNVSNNST STNNNPSPPN SPSHTPNEII IGEGFETIAK TSEEVLAAEL NAVNDETNEN  60
DTGGANEDGG AQGGVPRSMF VALIGDGSNT SMVEQVGGDN HVQPFKKRKY KLVRDPPIGI  120
PTCPVCKKEF ATWRAAFGHM NKHPDRPYRG FFPPPTFTPT ASVAGIHVED DCHPKEVDDE  180
GVLAVVRELI VDLNRSRSIE VPAKSSTAGG SGRNEEVPAL APKYEEGRRK NVFDLNELPP  240
NDDDDDDKIE EK*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102022128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.19e-10C2H2 family protein